PPI

Cambridge Healthtech Institute 第11回

Protein-Protein Interactions

( タンパク質間相互作用 )

治療的介入のためのタンパク質間相互作用 (PPI) の標的化

2018年4月3-4日 | Hilton Bayfront | カリフォルニア州サンディエゴ

 

タンパク質間相互作用 (PPI) を創薬標的として考える場合、細胞に浸透する低分子の化学物質によって破壊したり、安定化したりすることが可能な2つの相互に作用し合う細胞内タンパク質あるいはタンパク質複合体の表面に注目するのが一般的です。この点は、「従来の」低分子医薬品の標的で、生化学分析により測定可能な活性を有する (あるいは活性喪失がある) 酵素タンパク質とは対照的です。タンパク質複合体は、多くの重要な生理学的プロセスのベースであり、治療効果のある化合物にとっての有望な標的ですが、PPIの部位は、平坦で大きく、通常低分子が結合する溝やポケットとは大きく異なるため、最近まで細胞内PPIを標的化するのは難しいと見られていました。そのうえ、複合体の配座変更や破壊は、酵素活性喪失以上に測定が難しいという問題もあります。しかし、PPIの「ホットスポット」といえるような特性が発見されたことで、低分子医薬品による阻害の有効性が高まっています。また、タンパク質間相互作用を測定するための生物物理学的な手法も堅牢性が増しており、創薬への応用が可能になっています。このカンファレンスプログラムでは、製薬会社や大学に所属する医薬品化学や生物物理化学、構造生物学、創薬生物学の研究者が一堂に会し、これまでの失敗から学んだ教訓について意見を交換するとともに、創薬標的として大きな可能性を有するこの新たなクラスの一般的な性質について考えます。


Final Agenda

4月3日 (火)

7:00 am Registration and Morning Coffee

腫瘍治療のためのPPI標的

8:00 Welcome Remarks

Anjani Shah, PhD, Conference Director, Cambridge Healthtech Institute

8:05 Chairperson's Opening Remarks

Laura Silvian, PhD, Principal Scientist and Head, Physical Biochemistry, Biogen

8:10 Enabling Fragment and Structure-Based Discovery for Challenging Targets (Bcl-2, Mcl-1)

Roderick E. Hubbard, PhD, Professor, University of York and Director, Vernalis

Working on unprecedented targets is tough. It can take some time to generate suitable protein, develop an assay that can be trusted, identify tool compounds and design optimised molecules in the absence of structural information. I will describe our approaches to establish fragment and structure-based discovery for such targets, using as examples the early work on Bcl-2 and Mcl-1 with Servier that resulted in compounds that are now in Phase I clinical trials.

8:40 Structure-Based Design of Novel Inhibitors of the MCL-1's Protein-Protein Interaction

Xin Huang, PhD, Principal Scientist, Department of Molecular Engineering, Amgen

Mcl-1, a member of the Bcl-2 family, inhibits pro-death components of the intrinsic apoptosis pathway and thus is a key survival factor in multiple myeloma and other malignancies. Although compelling, targeting disruption of Mcl-1's protein-protein interaction to induce tumor cell death was previously thought to be "un-druggable" due to the high affinities of Mcl-1 to the pro-apoptotic Bcl-2 proteins and lack of a small molecule binding pocket. We report here our structure-based drug design of novel inhibitors of the Mcl-1 that led to AMG 176, a potent, selective, and bioavailable Mcl1 inhibitor in clinical development.

9:10 Presentation to be Announced

Artem Evdokimov, PhD, CSO, HarkerBIO

9:40 Coffee Break

10:05 Discovery of Potent and Selective Mcl-1 Inhibitors Using Fragment Merging and Structure-Guided Design

James (Chris) Tarr, PhD, Drug Discovery Scientist II, Stephen Fesik Laboratory, Department of Biochemistry, Vanderbilt University

Mcl-1 is a member of the Bcl-2 family of proteins responsible for the regulation of apoptosis and a highly validated target for cancer therapy. Using fragment screening by NMR followed by lead optimization employing structure-based design methods, we have developed selective, picomolar inhibitors of Mcl-1. These compounds act via the intrinsic apoptotic pathway, potently inhibit proliferation in cellular assays, and deliver efficacy in xenograft tumor models. Efforts to develop a suitable clinical candidate are underway.

10:35 Targeting Nuclear Lamins to Inhibit DNA Repair

Xiangshu Xiao, PhD, Associate Professor, Physiology and Pharmacology, Oregon Health & Science University

Targeting DNA repair pathways has been validated as a promising strategy to develop novel cancer therapeutics. However, it has been very challenging to target DNA repair proteins. We have discovered a novel role of lamins in DNA repair and have developed the first-in-class small molecules to target lamins to inhibit DNA repair. We will present our exciting discovery in this space.

11:05 Combatting Cancer and Autoimmunity by Targeting Centrosomes and Specific Ubiquitin Ligases

Kamyar Hadian, PhD, Principal Investigator & Head, Assay Development and Screening Platform, Helmholtz Zentrum Muenchen

This lecture will give insights into two studies that deal with the discovery of small molecules that either target centrosomes for cancer therapy or an E2/E3 ligase protein-protein interaction to combat autoimmunity. We were able to validate and characterize these inhibitors in a variety of biochemical as well as cell-based assays. More importantly, we can provide preclinical proof-of-concept in relevant mouse models.

11:35 Luncheon Presentation (Sponsorship Opportunity Available) or Enjoy Lunch on Your Own

12:20 pm Session Break

ウイルス、神経変性および各種タンパク質複合体の標的化

1:15 Chairperson's Remarks

Kevin Lumb, PhD, Director, Discovery Sciences, Janssen R&D

1:20 HBV Capsid Assembly Inhibitors

Andrew Cole, PhD, Research Fellow, Medicinal Chemistry, Arbutus

The encapsidation of pregenomic RNA by dimeric units of hepatitis B virus core protein is an essential step in the viral life cycle of HBV, facilitating viral genome relaxed circular DNA synthesis, infectious virion production and maintenance of a nuclear covalently closed circular DNA pool. Small molecules that bind at the core protein dimer:dimer interface have been shown to demonstrate antiviral activity in vitro and in vivo, through interference with the HBV capsid assembly process.


1:50 FEATURED PRESENTATION: Assessing Mitochondrial Quality Control to Inform Discovery of Small Molecules Targeting the Keap1-NRF2 System

Michelangelo Campanella, PhD, PharmD, Professor and Unit Head, Mitochondrial Cell Biology and Pharmacology Research Group RVC and University College London Consortium for Mitochondrial Research

My talk will report upon Nrf2 inducers as pharmacological tolls in mitochondrial quality control operated by targeted autophagy. It will elaborate on the prominent biological activity in cellular homeostasis of the non-covalent Keap1-Nrf2 protein-protein interaction (PPI) inhibitor PMI, which is structurally distinct from the covalent Keap1 modifiers (e.g. sulforaphane) and amenable to therapeutic exploitation. Contextually, a newly devised method for High Throughput Screening (HTS) for this specific category of Keap1-Nrf2 inhibitors will be presented.

2:20 Protein Secretion Inhibitors

Dustin McMinn, PhD, Director, Head of Medicinal Chemistry, Kezar Life Sciences, Inc.

2:50 Drug Leads Originating from the Public/Private Consortium: European Lead Factory

Dimitrios Tzalis, PhD, CEO, Taros Chemicals; Head of Chemistry, European Lead Factory

Highlights of the European Lead Factory (ELF)

  • a public-private partnership that provides researchers in Europe a unique platform for translating innovative biology and chemistry into high-quality starting points for drug discovery
  • 200.000 de novo synthesized compounds are complimenting 300.000 compounds provided by participating pharmaceutical partners
  • So far resulted in >5.000 hit compounds with a defined biological activity from >90 successfully completed HTS and hit evaluation campaigns out of which a significant number of targets are PPIs

3:20 Sponsored Presentation (Opportunity Available)

3:35 Refreshment Break in the Exhibit Hall with Poster Viewing

4:30 Plenary Session Welcome Remarks from Event Director

Anjani Shah, PhD, Conference Director, Cambridge Healthtech Institute

4:35 Plenary Keynote Introduction

Kevin Lustig, PhD, CEO, Scientist.com


4:40 PLENARY KEYNOTE: Targeting Ras and MYC for the Treatment of Cancer

Stephen Fesik, PhD, Professor of Biochemistry, Pharmacology, and Chemistry, Orrin H. Ingram II Chair in Cancer Research, Vanderbilt University School of Medicine

Two of the most important targets in cancer are Ras and MYC. However, both of these highly validated cancer targets are thought to be undruggable. In this presentation, I will discuss our approaches for targeting both of these proteins directly and indirectly using fragment-based methods and structure-based design.

5:30 Welcome Reception in the Exhibit Hall with Poster Viewing

6:30 End of Day

4月4日 (水)

7:30 am Continental Breakfast Breakout Discussions

がん、エピジェネティクス、PPI

8:30 Chairperson's Remarks

Maurizio Pellecchia, PhD, Professor of Biomedical Sciences, University of California, Riverside (UCR) School of Medicine

8:35 Design of Allosteric K-Ras Inhibitors Targeting the Switch II Pocket

Juan J. Perez, PhD, Professor, Department of Chemical Engineering, Universitat Politecnica de Catalunya, Barcelona

K-Ras is an oncoprotein involved in numerous cancers. Inhibition of K-Ras has been elusive for many years because it cannot be competitive, due to the high affinity of the protein for GTP. Recently, small molecule inhibitors targeting the G12C K-Ras mutant have been disclosed. These molecules produce their action binding irreversibly into the inducible switch II pocket. In the present communication, we describe a novel series of reversible switch II inhibitors with nanomolar affinity.

9:05 NuRD Epigenetic Complex: An Emerging Target for Cancer Chemo-Sensitization

Elmar Nurmemmedov, PhD, MBA, Assistant Professor, Director of Drug Discovery, Translational Neurosciences and Neurotherapeutics, John Wayne Cancer Institute

NuRD complex plays a major role in the regulation of gene expression, chromatin organization, DNA damage repair, and genomic stability. NuRD complex is also involved in acquired resistance to chemotherapies in a number of cancers, including deadly brain cancers. Targeting RBBP4, an integral component of this complex, sensitizes resistant cancer cells to chemotherapy. We developed an approach that enables inhibition of RBBP4 and leads to selective elimination of resistant cancer cells; this is a new direction in targeting of chemo-resistant cancer cells.

9:35 Coffee Break in the Exhibit Hall with Poster Viewing

PPI阻害剤を見つけ出すためのフラグメントベースのアプローチ

10:30 Fragment-Based Discovery of a Chemical Probe for the NSD3-PWWP-1 Domain

Jark Bottcher, Principal Scientist, Medicinal Chemistry, Boehringer Ingelheim RCV GmbH & Co KG

We describe the fragment-based discovery of molecules binding to the proposed methyl-lysine binding site of the PWWP-1 domain of NSD3. Supported by a virtual screening approach and subsequent structure-based optimization, the initial hits were optimized into a chemical probe with confirmed binding in cellular assays. The probe and the related negative control can be used to explore the functions of the PWWP-1 domain.

11:00 Lead Generation without an X-Ray Crystal Structure: An NMR Method to Probe Protein-Ligand Complexes

Julien Orts, PhD, Professor, Laboratory of Physical Chemistry, Swiss Federal Institute of Technology ETH

My talk is about a NMR method to solve protein-ligand complex structure. I will present two or three examples of this method applied to finding inhibitors against specific PPI targets.

11:30 In silico Fragment Screening to Identify Cryptic Pockets and Allosteric Sites for PPI Inhibitor Development

Ben Cossins, PhD, Principal Scientist, UCB Pharma

Drug development is increasingly difficult and expensive. Valuable targets are not always amenable to modulation by small molecules and resources are often directed towards seemingly intractable targets. We have been building and applying molecular dynamics based fragment screening and de novo design approaches to try and understand ligandability and functionability for protein-protein interaction targets. We believe this approach can steer us towards hit compounds for tractable PPI targets.

12:00 pm End of Conference

* 不測の事態により、事前の予告なしにプログラムが変更される場合があります。